Biology 1424 Exam 2 Notes

Chapters 7, 8, 9, 10

 

CHAPTER 7 - LEAVES:

1.       The leaf is divided into two primary regions, the petiole and the blade.  The petiole is the stalk that attaches the leaf to the stem, while the blade is the flattened portion of the leaf, which is adapted for photosynthesis.  Some leaves have leaf-like structures called stipules at the base of the petiole.

2.       The primary function of the leaf is photosynthesis.

3.       In alternate leaf arrangement there is only one leaf displayed per node, while  opposite arrangement has two leaves per node and whorled arrangement has three or more leaves per node.

4.       An axillary bud is located on the stem at the point that the petiole attaches to the stem.  A simple leaf has a single undivided blade even though the blade may be deeply lobed in some species.  Compound leaves have a blade that is divided into individual leaflets that look like individual leaves, but there is no axillary bud at the point that the leaflet stalk attaches to the petiole.  See illustrations in the text and online lab.  Leaflets of a pinnately compound leaf are arranged linearly along a main stalk called the rachis.  Leaflets of a palmately compound leaf all attach to a petiole at the same point like fingers to the palm.  Again recognize that an axillary or lateral bud is located at the point at which the petiole attaches to the stem and that there is no axillary bud at the point where leaflets of a compound leaf join the rachis or petiole.

5.       Veins in leaves contain vascular tissue, xylem and phloem.  Leaves have a specific arrangement of veins that is characteristic of particular plant types.  Leaves with parallel venation have veins that run the length of the leaf and that are more or less parallel.  Parallel venation is characteristic of monocots.  Leaves with netted venation have veins that branch repeatedly forming a net-like arrangement of veins.  Netted venation is characteristic of dicots.  Veins of leaves with pinnately netted venation branch from a single central vein while leaves with palmately netted veins have several veins that branch from a single point at the base of the leaf.   Some more primitive plants like the Ginkgo have dichotomously branched veins.  Dichotomously branched veins always branch forming two branches like a fork.

6.       The epidermis of the leaf is usually only one cell in thickness and is composed of clear cells with no chloroplast.  The outside of the epidermis is covered with a waxy layer the cuticle.  The cuticle reduces the evaporation of water from the leaf surface. 

7.       The mesophyll is the region of photosynthesis.  Some leaves have a mesophyll divided into an upper region of column like cells (palisade mesophyll) and a loosely arranges region of irregularly shaped cells (spongy mesophyll).  If present the palisade mesophyll is the primary region of photosynthesis and the spongy mesophyll although still active in photosynthesis facilitates gas exchange.

8.       Stomata are openings in the epidermis that facilitate gas exchange.  Guard cells are found in pair change shape to regulate the size of the stomata.

9.       Leaf veins contain vascular tissues, sometimes fibers and are surrounded by a layer of chlorenchymous cells, the bundle sheath.  In cross section, xylem tissue is always located on the upper side and that phloem is always on the lower side of the bundle.  Monocots usually do not have a palisade layer where dicots do.

10.    Pine leaves are adapted to arid conditions.  The function of the hypodermis is to reduce the evaporation of water from the leaf surface. 

11.    Sun leaves are usually smaller, thicker and darker green than shade leaves that are located toward the inside of the plant.  Xerophytic leaves are adapted to dry conditions.  Mesophytic leaves are adapted to normal terrestrial conditions while hydrophytic leaves are adapted to very wet conditions such as aquatic plants.  

12.    The following specialized leaves are identified and pictured in your text.  Please refer to the text for the information   of the following: leaf tendrils, spines, prickles, storage leaves, flower pot leaves, window leaves, reproductive leaves, floral leaves and the leaves of carnivorous plants like pitcher plants and sundews.

13.    Autumn color results from a combination of factors including chlorophyll breakdown, the production of anthocyanins (red to blue pigments) and the appearance of carotenoids (yellow to orange) pigments that were always present, but mask by chlorophyll.

14.    Many trees with broad leaves drop their leaves annually due to seasonal changes.  In temperate regions with pronounced seasons trees drop their leaves in response to changes from summer to winter and in both temperate and tropical regions with pronounced wet and dry seasons trees often drop leaves in response to the dry season.  The process that facilitates leaf drop is called leaf abscission.  The petiole usually detaches from the stem along a layer called the abscission zone.  In this region the petiole is structurally weak due to the absence of lignin in the cell walls.  As the leaf senesces in the fall pectin and other materials in the middle lamella of the abscission zone are broken down by the action of enzymes such as pectinase and cellulase.  As the abscission layer softens the weight of the leaf will cause it to break.  The cells on the stem side of the abscission zone become suberized forming a corky layer.

 

CHAPTERS 8: FLOWERS, FRUIT AND SEED

 

1.        Annuals are plants that complete their life cycle in one growing season and then die.  The next generation arises from the seed left by previous generations at the beginning of each growing season. Biennials are plants that complete their life cycle in two growing seasons.  Only vegetative growth is produced the first season.  During the second season the plant flowers and produces seed.   Perennials are plants that live for many seasons and have many reproductive efforts over many years.

2.        The floral parts of monocots are usually displayed in threes or multiples of three, while dicots are usually in fours or fives or multiples of four or five.

3.        The flower is a greatly compressed stem with four whorls or sets of modified leaves that serve as floral parts.   The flower is attached to the stem by a stalk called the peduncle which expands at the base of the flower to form the receptacle. The floral parts arise from the receptacle.  Starting at the base and moving upward, the first whorl of floral parts is the calyx, which is composed of leaf like sepals.  The sepals often cover the bud and fold back as the flower opens.  In some flowers the sepals are brightly colored and petal-like in appearance. In such cases the sepals are referred to as tepals.

 

Stamens, the male organs of the flower, are the next whorl of floral parts.  Each stamen is divided into a supporting filament and an apical capsule-like structure, the anther.  Pollen grains are produced within the anther.  Each pollen grain is a male gametophyte, which represents the male plant in the sexual phase in the plant life cycle.

 

The last whorl of floral parts is the carpels.  The female gynoecium is composed on one or more carpels, each of which enclosed at least one ovule.  The female gynoecium may be composed of a single carpel or more than one carpel fused into a single structure.  The carpel is also referred to as the pistil.  The carpel or pistil is composed of a basal ovary, the style and an apical stigma.  The ovary contains one or more cavities that contain the ovules.  Each ovule contains a female gametophyte.  The style is the stalk that connects the ovary and the stigma, while the stigma is the structure to which the pollen grains adhere during pollination.

4.        If the sepals, petals and stamens originate from the upper surface of an inferior ovary due to the floral tube of the sepals, petals and stamens being fused to the ovary wall.    The sepals, petals and stamens of a superior ovary originate from the base of the ovary.   Ovary position is used to differentiate between hypogynous, perigynous and epigynous flowers.  The ovary is superior in hypogynous flowers and there is no floral tube surrounding the ovary.  Perigynous flowers have a superior ovary but the ovary is surrounded by a floral tube which is not fused to the ovary wall.  Epigynous flowers have a fully inferior ovary with the floral tube fused to the ovary wall. he second whorl of floral parts is the corolla, a structure composed of individual petals, which are brightly colored and showy in many flowers.  The shape and color of the petals is designed to attract pollinators such as birds and insects, while plants adapted to wind pollination usually have very small petals if any at all.  The term corolla means colored wheel.



5.        A fruit is a ripened of mature ovary.  As the ovary wall the fruit provides protection for the developing seed nad then facilitates dispersal of the seed in one way or another at maturity.

6.        The matured ovary wall or fruit is the pericarp, which is divided into three layers.  The outer layer is the exocarp, the middle the mesocarp and the inner most layer the endocarp.  The layers vary in thickness from one variety of fruit to another and vary from being soft and fleshy to being dry and very hard.

 

7.    Fruits are divided into four basic types: simple fruit, aggregate fruit, multiple fruit and accessory fruit.   A simple fruit is one that develops from a single carpel or pistil.  Most fruits are simple fruit and are divided into two major groups, fleshy and dry. 

 

A berry is a fruit that is fleshy through out.  The exocarp, mesocarp and endocarp of a true berry is soft throughout with tomatoes, grapes and bananas as examples.  A pepo such as a watermelon or cucumber has a thick rind, while a hesperidium has a leathery, oil containing skin.  Hesperidiums are citrus fruit such as oranges, lemons and grapefruit.  Another type of simple fruit is the drupe.  A drupe has a fleshy exocarp and mesocarp, but a hard, stony endocarp.  Examples of drupes are peaches and apricots.

 

Dry simple fruit are divided into those that split along a seam at maturity, dehiscent and those that do not split, indehiscent.  The classification of dehiscent fruit is based upon whether they split along one, two or many seams.  Follicles split along one seam, legumes two seams and capsules, which consist of at least two carpels split in a variety of ways.  A silique is a type of dry dehiscent fruit that splits along two seams but the seed are borne on a central partition.  

 

Dry indehiscent fruit are grain (caryopsis), nuts, achenes, samaras and schizocarps.   A grain such as corn has a fused pericarp and seed coat.  The pericarp and seed coat can not be separated.  An achene is similar to a caryopsis except that the pericarp and the seed coat are easily separated.  The sunflower seed is an example of an achene. A nut is similar to an achene except the pericarp is usually much thicker and harder.  The base of the nut is enclosed in a cup-like structure composed of fused bracts.  An acorn is an example of a true nut. A maple seed is an example of a samara.  The pericarp of the fruit extends out into a wing like structure that assist in dispersal of the seed.  The schizocarp is a double fruit or twin fruit that separate from each other at maturity.  A schizocarp is unique to the carrot family (Apiaceae).

 

Aggregate fruit develop from flowers that have many individual and separate pistils.  Each individual pistil develops into a fruitlet.  As the fruitlets develop they fuse together to produce the aggregate.  Examples are blackberries and raspberries. Multiple fruit develop from many individual flowers that are borne very close together on an inflorescence.  As they develop the individual fruit fuse together as in pineapples and horse apples.

 

Much of the fleshy tissue of an accessory fruit (pomes) develops from tissues other than the ovary wall.  Usually a floral tube enlarges and becomes fleshy as it grows amount the ovary or true fruit.   Examples are strawberries, apples and pears.
 

8.     Wind, animals and water can serve as agents of dispersal for plant seed and fruit.  Many seed have plume like structures that assist the seed in floating in air and can thus allow the seed to be carried a considerable distance from the parent plant.  Many other plants have hooks or other kinds of adhesive structures or secretions that allow them to adhere to the hair, feathers or skin of an animal that can carry the seed a considerable distance.  Still other seed must pass through the digestive system of an animal before they will germinate or they are simply transported in the digestive system of an animal. Even when we consider islands as distance from other land masses as the Hawaiian Islands. Many species reached the islands by being carried by birds, either on the feathers or in the gut.  A few seed have adaptations that allow them to be transported by floating in fresh water or even sea water.

 

9.   The seed, a small self-sufficient reproductive package, has three main parts.  These are the outer protective seed coat, which develops from the integument that surrounds the ovule, the embryo and the endosperm. The embryo is composed of the radicle which develops into the root, the plumule which develops into the shoots and the cotyledon(s) which store and transfer food to the developing embryo. The endosperm is a food storage tissue that is present at some point in the development of all seed.

Seed can be divided into two basic types, monocots and dicots. Monocots have a single cotyledon that is not usually used for food storage but transfers food from the endosperm to the developing embryo. Dicot seeds have two cotyledons although there are two types based upon the presence or absence of endosperm. A dicot such as the common bean has no endosperm in the seed at maturity; it has all been absorbed by the cotyledons. In contrast dicots such as caster beans have both endosperm and cotyledons at maturity.

 

10. Two distinct patterns of germination can be identified. In monocots and some dicots the plumule pushes upward through the soil developing into the shoot system while the radicle grows downward producing the root system. At first roots develop faster insuring their ability to provide water and minerals for the developing shoot system.

Some dicots such as beans show a different pattern of development. In this type of seed the region of the embryo between the point of cotyledon attachment and the plumule is the hypocotyl. As the seed germinates the radicle rapidly produces a root system while the hypocotyl arches thought the soil. As the young plant continues to develop the hypocotyl arch straightens pulling the cotyledons and plumule out of the soil.

11.  In temperate regions many seed undergo a period of dormancy before they germinate.  This insures that the seed do not germinate at the end of the growing season.  Often seed require a period of chilling before germination.  Plants adapted to desert conditions or extended periods of drought produce seed that require extensive flushing with water to break dormancy.  In contrast seed produced in wet tropical areas may germinate while still in the fruit on the tree.  When all conditions for germination are met such as chilling, adequate water, proper temperature or even passing through the digestive system of an animal, the embryo is able to absorb food from the endosperm or cotyledons and begins to grow rapidly.

 

CHAPTER 9 – WATER IN PLANTS:

 

1.    DIFFUSION - The random movement of particles (molecules or ions) from a region of their greater concentration to a region of their lower concentration.  Results from random molecular motion.  Occurs in gases, liquids and solids.  Occurs more rapidly with substances of lower density and at higher temperatures.  WHY?

 

2.    OSMOSIS - The diffusion of a solvent (usually water in biological systems) across a differentially permeable membrane.

 

3.    DIALYSIS - The diffusion of a solute across a differentially permeable membrane.

4.     BULK FLOW - The massive movement of substances in one direction due to a strong concentration gradient.  Often the organism is actively involved in the creation of the concentration or pressure gradient.  An example is the flow of sugars from the roots of plants to the shoots through transport tubes called phloem.  Sugars are actively loaded into the phloem in the roots causing water to diffuse into the phloem causing a strong pressure gradient between the roots and the shoots.  The loading point is the "source", the unloading point in the shoot is the "sink".

5.   TURGOR - Internal water pressure in plant cells due to the diffusion of water into the cell vacuole which pushes outward against the cell wall causing the wall to stretch and become rigid.  Turgor results from plant roots being in contact with soil water that is hypotonic to plant cells.  As a result water diffuses into plant cells until the internal physical   pressure equals the osmotic tendency (force) to diffuse into the cell. Turgor is responsible for much of the support and form of soft plant tissues.

6.   Plasmolysis is the loss of water from the plant cell due to the cell being in a hypertonic environment.  Imbibition is a process by which a porous material absorbs a liquid and swells.  This occurs as seed absorb large amounts of water prior to germination

7.        Transpiration is the evaporation of water from the leaf surface.

8.        Root pressure develops as a result of positive osmotic pressure in the xylem.  As a result water is pushed up the xylem column.  Root pressure can only push water a few inches above the surface of the soil.

9.        Active transport involves the movement of ions or molecules across a membrane against its concentration gradient.  A carrier and energy from ATP is required to move ions or molecules against the concentration gradient.

10.     The transpiration-cohesion theory involves both the transpiration of water from the leaf surface and the fact that water molecules are attracted to each other.  This attraction is cohesion, thus a column of water can be supported against the pull of gravity to the extent that theoretically a column could be pulled 600 feet above the surface. As water is transpired from the leaf surface it creates a negative water pressure in the leaves.  Water is thus pulled up the column of xylem tissue to replace that that was lost.

11.     In most plants the stoma are open during the day and closed at night.  Exposure to light causes an influx of K+ from surrounding subsidiary cell.  This produces a negative osmotic pressure in the guard cells causing water to diffuse into the guard cells.. the result is that the guard cells swell and the stoma opens.  At sundown K+ is transported out of the guard cells causing them to lose water to surrounding cell.  This results in the closing of the stoma.  Overriding all of this is water stress.  Under water stress the concentration of abscisic acid increases in the guard cells and prevents the inflow of K+ when leaves are exposed to light, thus the stoma remain closed reducing the loss of water from the leaf.

 

 

CHAPTER 10 – METABOLISM IN PLANTS:

 

1.    The leaf is a specialized stem that is flattened so that it can collect as much light as possible.  Within the leaf, cells are arranged so that they can collect as much light as possible.  Chloroplast located within the cells serve as the organelles of photosynthesis.  Each chloroplast is surrounded by two smooth outer membranes with a complex inner network of membranes the thylakoids.  Thylakoids are arranged in stacks of thylakoid disk called grana.  Photosynthetic pigments and the compounds of the electron transport system are located in the thylakoid membranes.  The fluid filled region of the chloroplast outside the thylakoids, which contains the enzymes involved with carbon fixation, is the stroma .

 

2.    SUMMARY OF PHOTOSYNTHESIS:

 

       6CO2 + 12 H2O ---------> C6H12O6  +  6O2  +  6H2O

 

 3.   Visible light makes up a small part of the spectrum of electromagnetic energy.  Different forms of electromagnetic energy differ from each other in the wavelength of the energy.  Electromagnetic energy ranges from gamma rays at the short wave end, with a wavelength 10nm,  to radio waves, with wavelengths up to several meters, at the long wave end of the spectrum.  Short wave energy has the greatest amount of energy.  Visible light is found just beyond ultraviolet energy, and has a wavelength that ranges from 400 to 750nm.  Light energy is measured in photons.  Photons are absorbed by plant pigments such as chlorophyll and carotenoid.  Light energy is transferred to electrons of the pigments and is ultimately used in the synthesis of ATP. 

 

 4.   Chlorophyll a is the essential photosynthetic pigment of all green plants.  Other pigments such as chlorophyll b, c, d, carotenoids and xanthrophylls are accessory pigments that transfer light energy in the form of excited electrons to chlorophyll a.  The absorption spectrum of chlorophyll identifies the colors of visible light absorbed by chlorophyll.  Chlorophyll a and b absorb very little light in the green range but are very active in the absorption of blue and red light. The action spectrum of photosynthesis describes the activity of the various colors of light in photosynthesis.  Accessory pigments collect energy from colors of light not utilized by chlorophyll a and transfer the energy to chlorophyll a.

 

 5.   The light dependent phase of photosynthesis is dependent upon light as a source of energy, while the light independent phase is dependent upon ATP generated in the light dependent phase as its energy source.  The light dependent phase uses water as a raw material and produces ATP, NADPH and oxygen.  The light dependent phase occurs in association with the thylakoids.  The light independent phase occurs in the stroma and uses H  from NADPH and energy from ATP to reduce carbon dioxide to a carbohydrate.

 

 6.   Photosystems are collections of chlorophyll and accessory pigments that function as light harvesting units in photosynthesis.  The photosystems are embedded in the thylakoid membrane.  Light energy is transferred to high energy electrons in the photosystem.  This is the conversion of electromagnetic energy into chemical energy.        

 

7.    Cyclic photophosphorylation is a process that is not an essential part of photosynthesis, but is a process through which ATP is produced in the presence of light.  In cyclic photophosphorylation electrons of photosystem I are excited by photons and transferred to electron transport pigments which release free energy.  This free energy is used to pump H+ into the thylakoid space forming an electrochemical gradient which is used to produce ATP.  The process is cyclic because the same electrons are returned to the photosystem from which they exited. Noncyclic photophosphorylation is the light dependent phase of photosynthesis.  It  involves both photosystems I and II.  It is noncyclic because the electrons returned to the photosystems are not the same ones that originally exited.  The electrons that leave from photosystem I pass through a series of electron transport pigments eventually reducing NADP+ to NADP-.  NADP- then attracts a H+ becoming NADPH.  Photosystem II absorbs photons and transfers high energy electrons to an electron transport system.  This electron transport system releases energy used to establish an electrochemical gradient across the thylakoid membrane.  This results in the production of ATP.  The electrons from photosystem II are transferred to photosystem I.  Photosystem II  is now short 2e-. These are pulled from water in the process of  photolysis which  produces 2H+ and O.

 

8.    In photosynthesis, chemiosmosis occurs by H+ being pumped from the stroma to the thylakoid space.  This establishes an electrochemical gradient across the thylakoid membrane.  As  hydrogen ions move back to the stroma through a channel protein, coupled to ATP synthase, energy is release and ATP is generated.  This is called photophosphorylation.

 

9.    The light independent phase is also referred to as the Calvin Cycle or simply as carbon fixation.  During this phase carbon dioxide is reduced by H from NADPH producing a carbohydrate.  Energy for this highly endergonic process is derived from ATP produced in the light dependent phase.  Carbon fixation is a cyclic process dependent upon the regeneration of a 5C compound,) ribulose 1,5 bisphosphate (RuBP).  RuBP is the compound that initially accepts CO2 at the beginning of the Calvin Cycle.

 

10. Photorespiration is a process in which oxygen competes with carbon dioxide for the binding site on RuBP.  The higher the O2 concentration the greater the chance of O2 binding to RuBP.  Bright light and high temperature increases the chance of photorespiration.  When O2 binds to RuBP it results in the break down of RuBP thus reducing the rate of photosynthesis by as much as 50%.

 

11. The type of photosynthesis discussed so far is C3 photosynthesis.  This is because a three carbon compound is the first identifiable compound produced as carbon dioxide enters the Calvin Cycle.  C3 photosynthesis is especially sensitive to photorespiration, thus under conditions of bright light and high temperature, C3 plants suffer greatly from photorespiration.  Plants that carry on C4 photosynthesis avoid photorespiration by binding CO2 to a 3C compound, phosphoenol pyruvate, producing a 4C compound, oxaloacetate, in the mesophyll  cells.  Oxaloacetate is converted into malate that diffuses into the bundle sheath cells where CO2 is released, converting malate into 3C pyruvate which diffuses back to the mesophyll.  The release of CO2 in the bundle sheath cells creates a high concentration of CO2 in the bundle sheath cell.  As a result the Calvin Cycle is completed in the bundle sheath cells greatly increasing photosynthetic efficiency under conditions of bright light and high temperatures.  Many tropical plants adapted to these conditions are C4 plants.  These include sugar cane, Bermuda grass and many others.

 

12. Crassulacean acid metabolism (CAM) is a process that occurs in certain plants adapted to very dry conditions.  In this process the plants close their stomata during the day and open them at night.  This allows them to conserve water, but restricts their CO2  uptake during daylight hours.  CAM plants take CO2 from the atmosphere at night and convert it to organic acids.  During the day the acids release CO2 which is used in photosynthesis.  Cacti are common CAM plants.